CompChem-Database: compound details

CompChem-Database: details for selected entry

DB12383 (10145)

Formula C₉H₁₂ClN₃O₄

MW 261.66

InChIKey NGGRGTWYSXYVDK-QMLCPYSLNA-N

Entry_Date 2023-09-01

Net_Charge 0

Number_Atoms 29

Number_Heavy_Atoms 17

Number_Rings 2

Number_Bonds 30

Rotat_Bonds 4

Unbranched_Chain 2

Chiral_Centers 3

ONatoms 7

HB_Donor 3

HB_Acceptor 3

OpenEye_HB_Donors 4

OpenEye_HB_Acceptors 5

Lipinski_HB_Donors 3

Lipinski_HB_Acceptors 7

Lipinski_Violations 0

XLogP3 0

XLogP -1.03

logP -0.2992

PSA 110.6

MR 59.696

ABS 0.55

Solubility very

Aggregator Pass

PM7_Heat_of_Formation_kcal_per_mol -140.70553

PM7_Total_Energy_ev -3273.9996

PM7_Electronic_Energy_ev -20270.01064

PM7_Dipole_Debye 6.40211

PM7_Point_Group C1

PM7_HOMO_Energy_ev -9.511

PM7_LUMO_Energy_ev -0.494

PM7_COSMO_Area_square_ang 253.64

PM7_COSMO_Volue_cubic_ang 275.11

PM7_Electron_Affinity_ev 0.494

PM7_Ionization_Energy_ev 9.511

PM7_Energy_Gap_ev 9.017

PM7_Global_Hardness_ev 4.5085

PM7_Global_Softness_ev 0.22180326050792948

PM7_Chemical_Potential_ev -5.0025

PM7_Electronigativity_ev 5.0025

PM7_Back_Donation_Energy_ev -1.127125

PM7_Electrophilicity_ev 2.7753139902406567

OPENEYE_Name 4-amino-5-chloro-1-[(2~{R},4~{S},5~{R})-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one

SMILES c1c(c(nc(=O)n1C2CC(C(O2)CO)O)N)Cl

Canonical_SMILES OC[C@H]1O[C@H](C[C@@H]1O)n1cc(Cl)c(nc1=O)N

InChI 1/C9H12ClN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/f/h11H2

InChI_3D 1S/C9H12ClN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1

AuxInfo 1/1/N:5,1,9,2,6,7,8,3,4,17,12,10,11,16,15,13,14/F:m/rA:29cCCCCCCCCCNNNOOOOClHHHHHHHHHHHH/rB:d1;s2;;;s5;s6;s5;s7;d3s4;s1s4s8;s3;d4;s7s8;s6;s9;s2;s1;s5;s5;s6;s7;s8;s9;s9;s12;s12;s15;s16;/rC:0,1.0051,0;;.8674,-.4976,0;1.7348,1.0051,0;1.0793,3.4898,0;.2126,3.9918,0;-.5342,3.3245,0;.8674,2.5126,0;-2.0519,2.4533,0;1.7348,0,0;.8674,1.5126,0;.8674,-1.4976,0;2.6023,1.5026,0;-.1273,2.406,0;-1.0843,5.1667,0;-2.9192,1.9554,0;-.8653,-.5012,0;-.4337,1.2538,0;1.2837,3.9461,0;1.5543,3.3338,0;.5074,4.3957,0;-.8268,3.7299,0;1.3646,2.4593,0;-1.803,2.0196,0;-2.3009,2.8869,0;.4344,-1.7476,0;1.3004,-1.7476,0;-.9789,5.6555,0;-2.9205,1.4554,0;

Duplicates DB12383

mol2_Path /CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.mol2

pdbqt_Path /CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.pdbqt

sdf_Path /CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.sdf

Formula	C₉H₁₂ClN₃O₄
MW	261.66
InChIKey	NGGRGTWYSXYVDK-QMLCPYSLNA-N
Entry_Date	2023-09-01
Net_Charge	0
Number_Atoms	29
Number_Heavy_Atoms	17
Number_Rings	2
Number_Bonds	30
Rotat_Bonds	4
Unbranched_Chain	2
Chiral_Centers	3
ONatoms	7
HB_Donor	3
HB_Acceptor	3
OpenEye_HB_Donors	4
OpenEye_HB_Acceptors	5
Lipinski_HB_Donors	3
Lipinski_HB_Acceptors	7
Lipinski_Violations	0
XLogP3	0
XLogP	-1.03
logP	-0.2992
PSA	110.6
MR	59.696
ABS	0.55
Solubility	very
Aggregator	Pass
PM7_Heat_of_Formation_kcal_per_mol	-140.70553
PM7_Total_Energy_ev	-3273.9996
PM7_Electronic_Energy_ev	-20270.01064
PM7_Dipole_Debye	6.40211
PM7_Point_Group	C1
PM7_HOMO_Energy_ev	-9.511
PM7_LUMO_Energy_ev	-0.494
PM7_COSMO_Area_square_ang	253.64
PM7_COSMO_Volue_cubic_ang	275.11
PM7_Electron_Affinity_ev	0.494
PM7_Ionization_Energy_ev	9.511
PM7_Energy_Gap_ev	9.017
PM7_Global_Hardness_ev	4.5085
PM7_Global_Softness_ev	0.22180326050792948
PM7_Chemical_Potential_ev	-5.0025
PM7_Electronigativity_ev	5.0025
PM7_Back_Donation_Energy_ev	-1.127125
PM7_Electrophilicity_ev	2.7753139902406567
OPENEYE_Name	4-amino-5-chloro-1-[(2~{R},4~{S},5~{R})-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one
SMILES	c1c(c(nc(=O)n1C2CC(C(O2)CO)O)N)Cl
Canonical_SMILES	OC[C@H]1O[C@H](C[C@@H]1O)n1cc(Cl)c(nc1=O)N
InChI	1/C9H12ClN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/f/h11H2
InChI_3D	1S/C9H12ClN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1
AuxInfo	1/1/N:5,1,9,2,6,7,8,3,4,17,12,10,11,16,15,13,14/F:m/rA:29cCCCCCCCCCNNNOOOOClHHHHHHHHHHHH/rB:d1;s2;;;s5;s6;s5;s7;d3s4;s1s4s8;s3;d4;s7s8;s6;s9;s2;s1;s5;s5;s6;s7;s8;s9;s9;s12;s12;s15;s16;/rC:0,1.0051,0;;.8674,-.4976,0;1.7348,1.0051,0;1.0793,3.4898,0;.2126,3.9918,0;-.5342,3.3245,0;.8674,2.5126,0;-2.0519,2.4533,0;1.7348,0,0;.8674,1.5126,0;.8674,-1.4976,0;2.6023,1.5026,0;-.1273,2.406,0;-1.0843,5.1667,0;-2.9192,1.9554,0;-.8653,-.5012,0;-.4337,1.2538,0;1.2837,3.9461,0;1.5543,3.3338,0;.5074,4.3957,0;-.8268,3.7299,0;1.3646,2.4593,0;-1.803,2.0196,0;-2.3009,2.8869,0;.4344,-1.7476,0;1.3004,-1.7476,0;-.9789,5.6555,0;-2.9205,1.4554,0;
Duplicates	DB12383
mol2_Path	/CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.mol2
pdbqt_Path	/CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.pdbqt
sdf_Path	/CCDB/DrugBank/Database/Compound-0000000000-0000049999/Compound-0000012250-0000012499/DB12383.sdf